GTOP database contains protein fold predictions. Predictions are mainly carried out with the homology search program PSI-BLAST, currently the most popular among high-sensitivity profile search methods. GTOP also includes the results of other analyses, e.g. homology and motif search, detection of transmembrane helices and repetitive sequences. The database contains the sequences of 41 organisms, with the number of proteins exceeding 120 000 in total. GTOP uses a graphical viewer to present the analytical results of each ORF in one page in a 'color-bar' format. The assigned 3D structures are presented by Chime plug-in or RasMol. The binding sites of ligands are also included, providing functional information.
Kawabata T., Fukuchi S., Homma K., Ota M., Araki J., Ito T., Ichiyoshi N., Nishikawa K. (2002) Nucl. Acids Res., 30, 294-298.
Адрес: http://spock.genes.nig.ac.jp/~genome/gtop.html
См. также:
GID - the Global Image Database
GKB - Genome KnowledgeBase
GO - Gene Ontology consortium database
GOBASE - The Organelle Genome Database
GOLD - Genomes On Line Database
HGMD - Human Gene Mutation Database
HGNC - The HUGO Gene Nomenclature Committee Database
HGNDB - Human Gene Nomenclature DataBase
Histones - Histone sequence database
HIV Molecular Immunology Database
...
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